As a small update. I was going to recover my hard drive to see the results, but I could not even get that far. I tried running DiskPart "clean all" on my drives (which I have done before several times) from my Win7 WinPE jump drive. Upon doing that I eventually got an error message (about 3 minutes into it) saying it could not communicate with my disk. Now one of my SSDs cannot even be detected at all via my RAID controller. So this keeps getting better.
My other SSD is detected just fine and my other RAID 0 setup (with my VelociRaptor drives) is currently fine. So, this is looking as if the new firmware did a number on my setup here.