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If that could help someone I describe the way to avoid problem when cloning old HDD (512 bytes by physical sector) to new HDD (4kb by physical sector).
Before cloning, Intel Rapid Storage driver must be installed on old drive (v9.6 in my case Vista 32bits and bios in AHCI mode) and Microsoft KB2553708 too.
If KB2553708 update is forgetted before cloning, it can't be installed directly after (installation error) but ESENT.DLL 6.0.6002.22531 can be extract from Windows6.0-KB2553708-x86.msu.
Open cmd windows in administrator mode and go to KB2553708 download directory
expand -F:* Windows6.0-KB2553708-x86.msu
expand -F:* Windows6.0-KB2553708-x86.cab
With explorer find old ESENT.DLL in system32 directory.
Change security to have full access and to be owner of this file.
In cmd mode goto system32 directory and rename ESENT.DLL -> ENSENT.OLD
With explorer find the new ESENT.DLL on expand directory and copy it to system32.
Reboot and install KB2553708.
Normally it works without problem...