Now, I had a look at the partition table with fdisk:
Disk /dev/sda: 120.0 GB, 120034123776 bytes
255 heads, 63 sectors/track, 14593 cylinders, total 234441648 sectors
Units = sectors of 1 * 512 = 512 bytes
Disk identifier: 0xf3a9f3a9
Device Boot Start End Blocks Id System
/dev/sda1 * 2048 2039807 1018880 b W95 FAT32
/dev/sda2 2039808 207832904 102896548+ 5 Extended
/dev/sda5 2041856 165885951 81922048 7 HPFS/NTFS
/dev/sda6 165888000 207833087 20972544 7 HPFS/NTFS
Now it's obvious. The Acronis Align Tool from the Intel Site created a faulty partition table!
Why are you propagation such faulty tools on your website???
I actually bought an Intel product, for you're famous to only propagate tested and working things.
Obviously the tools aligned all 3 partitions. But it didn't correct the extended partition, wherein the 2 logical partitions lie. Now the end of the 3rd partition doesn't lie anymore within the extended partition!
What way is there to correct this faulty partition table?