I do not have the right kind of computer handy to try this, but I asked around and think I know the right prosetcl command.
PROSETCL.exe Adapter_SetSetting <AdapterIndex> EEELinkAdvertisement 0
PROSETCL.exe Adapter_SetSetting 1 EEELinkAdvertisement 0
Let me know if that command works and also if disabling EEE resolved your wake on LAN issues.
That's exactly what I needed to change the EEE setting. Thank you, Mark!!!
I won't know until tomorrow if that resolves the WoL issue, but I'm confident it will. I'll definitely let you know if it doesn't!