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Well, speculatively, there are a number of possibilities that come to mind:
- There are serial and i2c outputs on the Customer Solutions Headers on many of the NUCs and you could interface to a separate CAN card using them.
- I have seen some PCIe-based CAN cards. It is possible that a version of one of these could be developed that plugs into the NUC's M.2 mPCIe connector.
- You could still implement using USB; connecting to one of the internal USB 2.0 headers.